your method is expecting a document of the internal Revit class Autodesk.Revit.DB.Document and you are feeding a document in with the Dynamo object of Revit.Application.Document
Try changing your code as follows:
public static Autodesk.Revit.DB.View3D[] Create(Autodesk.Revit.DB.FamilyInstance[] familyInstance, int offset, bool proceed)
{
//this obtains the active document
var Doc = DocumentManager.Instance.CurrentDBDocument;
List<Autodesk.Revit.DB.View3D> result = new List<Autodesk.Revit.DB.View3D>();
if (proceed)
{
foreach (Autodesk.Revit.DB.FamilyInstance fi in familyInstance)
{
//cast the dynamo family instance to the internal Revit one.
var internalFi = (Autodesk.Revit.DB.FamilyInstance)fi.InternalElement();
Autodesk.Revit.DB.BoundingBoxXYZ boundingBoxXYZ = internalFi.get_BoundingBox(null);
result.Add(Create3DView(Doc, boundingBoxXYZ));
}
}
return result.ToArray() ;
}